References
=======

.. image:: _static/logo.svg

Here are the references of this package:

- DeLano, W. L. et al. Pymol: An open-source molecular graphics tool. CCP4 Newsletter on Protein Crystallography 40, 82–92 (2002).

- Corbi-Verge, C. & Kim, P. M. Motif mediated protein-protein interactions as drug targets. Cell Communication and Signaling 14, 1–12 (2016).

- Yang, J. et al. Improved protein structure prediction using predicted interresidue orientations. Proceedings of the National Academy of Sciences 117, 1496–1503 (2020).

- Lin, Z. et al. Evolutionary-scale prediction of atomic-level protein structure with a language model. Science 379, 1123–1130 (2023).

- Zhu, X. et al. Structural basis of adhesion gpcr gpr110 activation by stalk peptide and g-proteins coupling. Nature Communications 13, 5513 (2022).

- Kabsch, W. A solution for the best rotation to relate two sets of vectors. Acta Crystallographica Section A: Crystal Physics, Diffraction, Theoretical and General Crystallography 32, 922–923 (1976).

- Petitjean, M. On the root mean square quantitative chirality and quantitative symmetry measures. Journal of Mathematical Physics 40, 4587–4595 (1999).

- Zhang, Y. & Skolnick, J. Tm-align: a protein structure alignment algorithm based on the tm-score. Nucleic Acids Research 33, 2302–2309 (2005).

- Zhang, C., Shine, M., Pyle, A. M. & Zhang, Y. Us-align: universal structure alignments of proteins, nucleic acids, and macromolecular complexes. Nature Methods 19, 1109–1115 (2022).

- Xu, J. & Zhang, Y. How significant is a protein structure similarity with tmscore=0.5? Bioinformatics 26, 889–895 (2010).

- Mosca, R., Brannetti, B. & Schneider, T. R. Alignment of protein structures in the presence of domain motions. BMC Bioinformatics 9, 1–17 (2008).

- Jumper, J. et al. Highly accurate protein structure prediction with alphafold. Nature 596, 583–589 (2021).

- Frontzek, K. et al. A conformational switch controlling the toxicity of the prion protein. Nature Structural and Molecular Biology 29, 831–840 (2022).

- Pan, X. et al. Molecular basis for pore blockade of human na+ channel nav1. 2 by the μ-conotoxin kiiia. Science 363, 1309–1313 (2019).

- Gao, S., Yao, X. & Yan, N. Structure of human cav2. 2 channel blocked by the painkiller ziconotide. Nature 596, 143–147 (2021).